DNA-methyaltion-based age predictor

The study presents a software tool for predicting chronological age based on DNA methylation patterns. Key points:

1. The tool uses a large training dataset of 13,661 DNA methylation samples from blood and saliva.

2. The age predictor's accuracy improves as the training sample size increases, potentially leading to a near-perfect predictor with sufficient data.

3. The association between the age acceleration residual (AAR, the difference between predicted and actual age) and mortality weakens as the predictor's accuracy improves.

4. Based on the Elastic Net algorithm, the best predictor shows no significant association between AAR and mortality in the Lothian Birth Cohorts of 1921 and 1936.

5. Predictors trained on smaller sample sizes are more susceptible to confounding by cellular compositions than those trained on larger sample sizes.

6. The predictor performs comparably in non-blood tissues to a multi-tissue-based predictor.

Topic

Epigenetics;Geriatric medicine;DNA

Detail

  • Operation: Essential dynamics;Enrichment analysis;Genotyping

  • Software interface: Command-line interface

  • Language: R

  • License: Not stated

  • Cost: Free of charge

  • Version name: https://github.com/qzhang314/DNAm-based-age-predictor

  • Credit: The Australian Research Council, the Australian National Health and Medical Research Council, the Sylvia & Charles Viertel Charitable Foundation, Alzheimer’s Research UK Major Project Grant, the Chief Scientist Office of the Scottish Government Health Directorates, the Scottish Funding Council.

  • Input: -

  • Output: -

  • Contact: Peter M. Visscher peter.visscher@uq.edu.au

  • Collection: -

  • Maturity: -

Publications

  • Improved precision of epigenetic clock estimates across tissues and its implication for biological ageing.
  • Zhang Q, et al. Improved precision of epigenetic clock estimates across tissues and its implication for biological ageing. Improved precision of epigenetic clock estimates across tissues and its implication for biological ageing. 2019; 11:54. doi: 10.1186/s13073-019-0667-1
  • https://doi.org/10.1186/S13073-019-0667-1
  • PMID: 31443728
  • PMC: PMC6708158

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